Open Science in Data Creation and Collection Stage

During the data collection or data creation stage of a research project, it is important that researchers practice data management to not only improve organization and workflows but to ensure the integrity of their results. When data are easier to find, understand, and navigate, a research project can more easily be shared and reproduced.

For a comprehensive overview of file naming conventions, stable file formats, and file hierarchies, please visit our Research Data Management Guide.

Research Data Management Guide
The Texas State University Libraries supports data management planning, data preserving and publishing, and open data sharing, which foster reproducibility and responsible research.

Open Science in the Data Analysis Stage

During the analysis stage of a project, researchers can practice Open Science by using open source code, such as R, or selecting a code repository to create and manage their code as they analyze their data.

Open Source refers to source code that is made freely available for possible modification and redistribution. Using open source code makes research more reproducible since anyone can view and manipulate the code to verify data analysis.

Image by Colin Viebrock, from Wikimedia Commons

Open Source Code

The open source coding languages R and Python are useful for a variety of data manipulation, analysis, and visualization tasks. To download and start using one of these languages, explore the links below. For tutorials and training, please see the "Coding Resources" box at the bottom of this page.

Installing R for Desktop
This link allows you to download and install the most updated R version for your operating system.
Download RStudio for Desktop
RStudio is a easy-to-use interface for R. It is free and open-source through Posit.co, but requires initial installation of R to function.
RStudio (Online Version)
Posit also offers an online, browser-supported version of RStudio without any installation required. The individual plan is free, with more extensive versions available on a subscription basis.
Python.org
Python is an advanced open source programming language with an OSI-approved open source license, making it freely usable and distributable.

Code Repositories and Software

GitHub
GitHub is a developer platform that allows its users to create, manage, and share code for projects. It offers both free and paid plans.
GitLab
Git lab is a paid platform that allows users to develop, secure, and operate their own software using AI-powered tools.

Coding Resources

There are extensive, free resources available online for learning both R & Python.

Tutorial Sites:

Quick-R
Quick-R is a basic R tutorial for beginners offered by Datacamp.
StanfordOnline: R Programming Fundamentals
This free course from Stanford University covers the basics of R programming on the EdX platform.
Python for Non-Programmers
This tutorial provides a basic overview of Python for beginners.
Corey Schafer's YouTube Channel
This YouTube channel provides concise videos covering many aspects of Python.
Python Tutorial
These comprehensive Python lessons created by GeeksForGeeks is well-suited for both beginners and experienced programmers.

Attribution

Open Science Guide
This guide was created using many resources, many of them are linked throughout the guide. This guide was also built using information from UTSA Libraries and Museums guide on Open Science by Rachel Davis.